Tracking disease resistance deployment in potato breeding by enrichment sequencing.
Identifieur interne : 000355 ( Main/Exploration ); précédent : 000354; suivant : 000356Tracking disease resistance deployment in potato breeding by enrichment sequencing.
Auteurs : Miles R. Armstrong [Royaume-Uni] ; Jack Vossen [Pays-Bas] ; Tze Yin Lim [Royaume-Uni] ; Ronald C B. Hutten [Pays-Bas] ; Jianfei Xu [République populaire de Chine] ; Shona M. Strachan [Royaume-Uni] ; Brian Harrower [Royaume-Uni] ; Nicolas Champouret [États-Unis] ; Eleanor M. Gilroy [Royaume-Uni] ; Ingo Hein [Royaume-Uni]Source :
- Plant biotechnology journal [ 1467-7652 ] ; 2019.
Descripteurs français
- KwdFr :
- Amélioration des plantes (MeSH), Maladies des plantes (immunologie), Maladies des plantes (parasitologie), Phytophthora infestans (immunologie), Polymorphisme génétique (MeSH), Produits agricoles (MeSH), Protéines végétales (génétique), Résistance à la maladie (génétique), Solanum tuberosum (génétique), Solanum tuberosum (immunologie), Tétraploïdie (MeSH), Végétaux génétiquement modifiés (MeSH).
- MESH :
- génétique : Protéines végétales, Résistance à la maladie, Solanum tuberosum.
- immunologie : Maladies des plantes, Phytophthora infestans, Solanum tuberosum.
- parasitologie : Maladies des plantes.
- Amélioration des plantes, Polymorphisme génétique, Produits agricoles, Tétraploïdie, Végétaux génétiquement modifiés.
English descriptors
- KwdEn :
- Crops, Agricultural (MeSH), Disease Resistance (genetics), Phytophthora infestans (immunology), Plant Breeding (MeSH), Plant Diseases (immunology), Plant Diseases (parasitology), Plant Proteins (genetics), Plants, Genetically Modified (MeSH), Polymorphism, Genetic (MeSH), Solanum tuberosum (genetics), Solanum tuberosum (immunology), Tetraploidy (MeSH).
- MESH :
- chemical , genetics : Plant Proteins.
- genetics : Disease Resistance, Solanum tuberosum.
- immunology : Phytophthora infestans, Plant Diseases, Solanum tuberosum.
- parasitology : Plant Diseases.
- Crops, Agricultural, Plant Breeding, Plants, Genetically Modified, Polymorphism, Genetic, Tetraploidy.
Abstract
Following the molecular characterisation of functional disease resistance genes in recent years, methods to track and verify the integrity of multiple genes in varieties are needed for crop improvement through resistance stacking. Diagnostic resistance gene enrichment sequencing (dRenSeq) enables the high-confidence identification and complete sequence validation of known functional resistance genes in crops. As demonstrated for tetraploid potato varieties, the methodology is more robust and cost-effective in monitoring resistances than whole-genome sequencing and can be used to appraise (trans) gene integrity efficiently. All currently known NB-LRRs effective against viruses, nematodes and the late blight pathogen Phytophthora infestans can be tracked with dRenSeq in potato and hitherto unknown polymorphisms have been identified. The methodology provides a means to improve the speed and efficiency of future disease resistance breeding in crops by directing parental and progeny selection towards effective combinations of resistance genes.
DOI: 10.1111/pbi.12997
PubMed: 30107090
PubMed Central: PMC6335062
Affiliations:
- Pays-Bas, Royaume-Uni, République populaire de Chine, États-Unis
- Gueldre (province), Idaho
- Pékin, Wageningue
- Université de Wageningue
Links toward previous steps (curation, corpus...)
Le document en format XML
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Armstrong</name><affiliation wicri:level="1"><nlm:affiliation>CMS, The James Hutton Institute, Dundee, UK.</nlm:affiliation><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>CMS, The James Hutton Institute, Dundee</wicri:regionArea><wicri:noRegion>Dundee</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>School of Life Sciences, Division of Plant Sciences at the James Hutton Institute, University of Dundee, Dundee, UK.</nlm:affiliation><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>School of Life Sciences, Division of Plant Sciences at the James Hutton Institute, University of Dundee, Dundee</wicri:regionArea><wicri:noRegion>Dundee</wicri:noRegion></affiliation></author><author><name sortKey="Vossen, Jack" sort="Vossen, Jack" uniqKey="Vossen J" first="Jack" last="Vossen">Jack Vossen</name><affiliation wicri:level="4"><nlm:affiliation>Wageningen University, Wageningen, The Netherlands.</nlm:affiliation><country xml:lang="fr">Pays-Bas</country><wicri:regionArea>Wageningen University, Wageningen</wicri:regionArea><orgName type="university">Université de Wageningue</orgName><placeName><settlement type="city">Wageningue</settlement><region nuts="2">Gueldre (province)</region></placeName></affiliation></author><author><name sortKey="Lim, Tze Yin" sort="Lim, Tze Yin" uniqKey="Lim T" first="Tze Yin" last="Lim">Tze Yin Lim</name><affiliation wicri:level="1"><nlm:affiliation>CMS, The James Hutton Institute, Dundee, UK.</nlm:affiliation><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>CMS, The James Hutton Institute, Dundee</wicri:regionArea><wicri:noRegion>Dundee</wicri:noRegion></affiliation></author><author><name sortKey="Hutten, Ronald C B" sort="Hutten, Ronald C B" uniqKey="Hutten R" first="Ronald C B" last="Hutten">Ronald C B. 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Strachan</name><affiliation wicri:level="1"><nlm:affiliation>CMS, The James Hutton Institute, Dundee, UK.</nlm:affiliation><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>CMS, The James Hutton Institute, Dundee</wicri:regionArea><wicri:noRegion>Dundee</wicri:noRegion></affiliation></author><author><name sortKey="Harrower, Brian" sort="Harrower, Brian" uniqKey="Harrower B" first="Brian" last="Harrower">Brian Harrower</name><affiliation wicri:level="1"><nlm:affiliation>CMS, The James Hutton Institute, Dundee, UK.</nlm:affiliation><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>CMS, The James Hutton Institute, Dundee</wicri:regionArea><wicri:noRegion>Dundee</wicri:noRegion></affiliation></author><author><name sortKey="Champouret, Nicolas" sort="Champouret, Nicolas" uniqKey="Champouret N" first="Nicolas" last="Champouret">Nicolas Champouret</name><affiliation wicri:level="2"><nlm:affiliation>Simplot Plant Sciences, Boise, Idaho, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Simplot Plant Sciences, Boise, Idaho</wicri:regionArea><placeName><region type="state">Idaho</region></placeName></affiliation></author><author><name sortKey="Gilroy, Eleanor M" sort="Gilroy, Eleanor M" uniqKey="Gilroy E" first="Eleanor M" last="Gilroy">Eleanor M. Gilroy</name><affiliation wicri:level="1"><nlm:affiliation>CMS, The James Hutton Institute, Dundee, UK.</nlm:affiliation><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>CMS, The James Hutton Institute, Dundee</wicri:regionArea><wicri:noRegion>Dundee</wicri:noRegion></affiliation></author><author><name sortKey="Hein, Ingo" sort="Hein, Ingo" uniqKey="Hein I" first="Ingo" last="Hein">Ingo Hein</name><affiliation wicri:level="1"><nlm:affiliation>CMS, The James Hutton Institute, Dundee, UK.</nlm:affiliation><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>CMS, The James Hutton Institute, Dundee</wicri:regionArea><wicri:noRegion>Dundee</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>School of Life Sciences, Division of Plant Sciences at the James Hutton Institute, University of Dundee, Dundee, UK.</nlm:affiliation><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>School of Life Sciences, Division of Plant Sciences at the James Hutton Institute, University of Dundee, Dundee</wicri:regionArea><wicri:noRegion>Dundee</wicri:noRegion></affiliation></author></analytic><series><title level="j">Plant biotechnology journal</title><idno type="eISSN">1467-7652</idno><imprint><date when="2019" type="published">2019</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Crops, Agricultural (MeSH)</term><term>Disease Resistance (genetics)</term><term>Phytophthora infestans (immunology)</term><term>Plant Breeding (MeSH)</term><term>Plant Diseases (immunology)</term><term>Plant Diseases (parasitology)</term><term>Plant Proteins (genetics)</term><term>Plants, Genetically Modified (MeSH)</term><term>Polymorphism, Genetic (MeSH)</term><term>Solanum tuberosum (genetics)</term><term>Solanum tuberosum (immunology)</term><term>Tetraploidy (MeSH)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Amélioration des plantes (MeSH)</term><term>Maladies des plantes (immunologie)</term><term>Maladies des plantes (parasitologie)</term><term>Phytophthora infestans (immunologie)</term><term>Polymorphisme génétique (MeSH)</term><term>Produits agricoles (MeSH)</term><term>Protéines végétales (génétique)</term><term>Résistance à la maladie (génétique)</term><term>Solanum tuberosum (génétique)</term><term>Solanum tuberosum (immunologie)</term><term>Tétraploïdie (MeSH)</term><term>Végétaux génétiquement modifiés (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Plant Proteins</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Disease Resistance</term><term>Solanum tuberosum</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Protéines végétales</term><term>Résistance à la maladie</term><term>Solanum tuberosum</term></keywords><keywords scheme="MESH" qualifier="immunologie" xml:lang="fr"><term>Maladies des plantes</term><term>Phytophthora infestans</term><term>Solanum tuberosum</term></keywords><keywords scheme="MESH" qualifier="immunology" xml:lang="en"><term>Phytophthora infestans</term><term>Plant Diseases</term><term>Solanum tuberosum</term></keywords><keywords scheme="MESH" qualifier="parasitologie" xml:lang="fr"><term>Maladies des plantes</term></keywords><keywords scheme="MESH" qualifier="parasitology" xml:lang="en"><term>Plant Diseases</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Crops, Agricultural</term><term>Plant Breeding</term><term>Plants, Genetically Modified</term><term>Polymorphism, Genetic</term><term>Tetraploidy</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Amélioration des plantes</term><term>Polymorphisme génétique</term><term>Produits agricoles</term><term>Tétraploïdie</term><term>Végétaux génétiquement modifiés</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Following the molecular characterisation of functional disease resistance genes in recent years, methods to track and verify the integrity of multiple genes in varieties are needed for crop improvement through resistance stacking. Diagnostic resistance gene enrichment sequencing (dRenSeq) enables the high-confidence identification and complete sequence validation of known functional resistance genes in crops. As demonstrated for tetraploid potato varieties, the methodology is more robust and cost-effective in monitoring resistances than whole-genome sequencing and can be used to appraise (trans) gene integrity efficiently. All currently known NB-LRRs effective against viruses, nematodes and the late blight pathogen Phytophthora infestans can be tracked with dRenSeq in potato and hitherto unknown polymorphisms have been identified. The methodology provides a means to improve the speed and efficiency of future disease resistance breeding in crops by directing parental and progeny selection towards effective combinations of resistance genes.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">30107090</PMID><DateCompleted><Year>2019</Year><Month>06</Month><Day>03</Day></DateCompleted><DateRevised><Year>2020</Year><Month>03</Month><Day>09</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1467-7652</ISSN><JournalIssue CitedMedium="Internet"><Volume>17</Volume><Issue>2</Issue><PubDate><Year>2019</Year><Month>02</Month></PubDate></JournalIssue><Title>Plant biotechnology journal</Title><ISOAbbreviation>Plant Biotechnol J</ISOAbbreviation></Journal><ArticleTitle>Tracking disease resistance deployment in potato breeding by enrichment sequencing.</ArticleTitle><Pagination><MedlinePgn>540-549</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1111/pbi.12997</ELocationID><Abstract><AbstractText>Following the molecular characterisation of functional disease resistance genes in recent years, methods to track and verify the integrity of multiple genes in varieties are needed for crop improvement through resistance stacking. Diagnostic resistance gene enrichment sequencing (dRenSeq) enables the high-confidence identification and complete sequence validation of known functional resistance genes in crops. As demonstrated for tetraploid potato varieties, the methodology is more robust and cost-effective in monitoring resistances than whole-genome sequencing and can be used to appraise (trans) gene integrity efficiently. All currently known NB-LRRs effective against viruses, nematodes and the late blight pathogen Phytophthora infestans can be tracked with dRenSeq in potato and hitherto unknown polymorphisms have been identified. The methodology provides a means to improve the speed and efficiency of future disease resistance breeding in crops by directing parental and progeny selection towards effective combinations of resistance genes.</AbstractText><CopyrightInformation>© 2018 The Authors. Plant Biotechnology Journal published by Society for Experimental Biology and The Association of Applied Biologists and John Wiley & Sons Ltd.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Armstrong</LastName><ForeName>Miles R</ForeName><Initials>MR</Initials><Identifier Source="ORCID">0000-0002-9441-476X</Identifier><AffiliationInfo><Affiliation>CMS, The James Hutton Institute, Dundee, UK.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>School of Life Sciences, Division of Plant Sciences at the James Hutton Institute, University of Dundee, Dundee, UK.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Vossen</LastName><ForeName>Jack</ForeName><Initials>J</Initials><Identifier Source="ORCID">0000-0002-2889-0653</Identifier><AffiliationInfo><Affiliation>Wageningen University, Wageningen, The Netherlands.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Lim</LastName><ForeName>Tze Yin</ForeName><Initials>TY</Initials><AffiliationInfo><Affiliation>CMS, The James Hutton Institute, Dundee, UK.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Hutten</LastName><ForeName>Ronald C B</ForeName><Initials>RCB</Initials><AffiliationInfo><Affiliation>Wageningen University, Wageningen, The Netherlands.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Xu</LastName><ForeName>Jianfei</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>Chinese Academy of Agricultural Science (CAAS), Beijing, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Strachan</LastName><ForeName>Shona M</ForeName><Initials>SM</Initials><Identifier Source="ORCID">0000-0003-4460-6533</Identifier><AffiliationInfo><Affiliation>CMS, The James Hutton Institute, Dundee, UK.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Harrower</LastName><ForeName>Brian</ForeName><Initials>B</Initials><AffiliationInfo><Affiliation>CMS, The James Hutton Institute, Dundee, UK.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Champouret</LastName><ForeName>Nicolas</ForeName><Initials>N</Initials><AffiliationInfo><Affiliation>Simplot Plant Sciences, Boise, Idaho, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Gilroy</LastName><ForeName>Eleanor M</ForeName><Initials>EM</Initials><Identifier Source="ORCID">0000-0002-5301-4268</Identifier><AffiliationInfo><Affiliation>CMS, The James Hutton Institute, Dundee, UK.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Hein</LastName><ForeName>Ingo</ForeName><Initials>I</Initials><Identifier Source="ORCID">0000-0002-0128-2084</Identifier><AffiliationInfo><Affiliation>CMS, The James Hutton Institute, Dundee, UK.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>School of Life Sciences, Division of Plant Sciences at the James Hutton Institute, University of Dundee, Dundee, UK.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><DataBankList CompleteYN="Y"><DataBank><DataBankName>GENBANK</DataBankName><AccessionNumberList><AccessionNumber>ERP105478</AccessionNumber></AccessionNumberList></DataBank></DataBankList><GrantList CompleteYN="Y"><Grant><Agency>Rural and Environment Science and Analytical Services Division</Agency><Country>International</Country></Grant><Grant><GrantID>BB/K018299/1</GrantID><Agency>Biotechnology and Biological Sciences Research Council</Agency><Country>United Kingdom</Country></Grant><Grant><GrantID>BB/L008025/1</GrantID><Agency>Biotechnology and Biological Sciences Research Council</Agency><Country>United Kingdom</Country></Grant></GrantList><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2018</Year><Month>09</Month><Day>19</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>Plant Biotechnol J</MedlineTA><NlmUniqueID>101201889</NlmUniqueID><ISSNLinking>1467-7644</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D010940">Plant Proteins</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D018556" MajorTopicYN="N">Crops, Agricultural</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D060467" MajorTopicYN="N">Disease Resistance</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D055750" MajorTopicYN="N">Phytophthora infestans</DescriptorName><QualifierName UI="Q000276" 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1;61(6):315-322</Citation><ArticleIdList><ArticleId IdType="pubmed">27938323</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Plant Microbe Interact. 2009 May;22(5):601-15</Citation><ArticleIdList><ArticleId IdType="pubmed">19348577</ArticleId></ArticleIdList></Reference></ReferenceList></PubmedData></pubmed><affiliations><list><country><li>Pays-Bas</li><li>Royaume-Uni</li><li>République populaire de Chine</li><li>États-Unis</li></country><region><li>Gueldre (province)</li><li>Idaho</li></region><settlement><li>Pékin</li><li>Wageningue</li></settlement><orgName><li>Université de Wageningue</li></orgName></list><tree><country name="Royaume-Uni"><noRegion><name sortKey="Armstrong, Miles R" sort="Armstrong, Miles R" uniqKey="Armstrong M" first="Miles R" last="Armstrong">Miles R. Armstrong</name></noRegion><name sortKey="Armstrong, Miles R" sort="Armstrong, Miles R" uniqKey="Armstrong M" first="Miles R" last="Armstrong">Miles R. Armstrong</name><name sortKey="Gilroy, Eleanor M" sort="Gilroy, Eleanor M" uniqKey="Gilroy E" first="Eleanor M" last="Gilroy">Eleanor M. Gilroy</name><name sortKey="Harrower, Brian" sort="Harrower, Brian" uniqKey="Harrower B" first="Brian" last="Harrower">Brian Harrower</name><name sortKey="Hein, Ingo" sort="Hein, Ingo" uniqKey="Hein I" first="Ingo" last="Hein">Ingo Hein</name><name sortKey="Hein, Ingo" sort="Hein, Ingo" uniqKey="Hein I" first="Ingo" last="Hein">Ingo Hein</name><name sortKey="Lim, Tze Yin" sort="Lim, Tze Yin" uniqKey="Lim T" first="Tze Yin" last="Lim">Tze Yin Lim</name><name sortKey="Strachan, Shona M" sort="Strachan, Shona M" uniqKey="Strachan S" first="Shona M" last="Strachan">Shona M. Strachan</name></country><country name="Pays-Bas"><region name="Gueldre (province)"><name sortKey="Vossen, Jack" sort="Vossen, Jack" uniqKey="Vossen J" first="Jack" last="Vossen">Jack Vossen</name></region><name sortKey="Hutten, Ronald C B" sort="Hutten, Ronald C B" uniqKey="Hutten R" first="Ronald C B" last="Hutten">Ronald C B. Hutten</name></country><country name="République populaire de Chine"><noRegion><name sortKey="Xu, Jianfei" sort="Xu, Jianfei" uniqKey="Xu J" first="Jianfei" last="Xu">Jianfei Xu</name></noRegion></country><country name="États-Unis"><region name="Idaho"><name sortKey="Champouret, Nicolas" sort="Champouret, Nicolas" uniqKey="Champouret N" first="Nicolas" last="Champouret">Nicolas Champouret</name></region></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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